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Programmable RNA Acetylation Achieved via CRISPR–Cas13

02 JUNE, 2025

The team at the Korea Advanced Institute of Science and Technology, led by senior author Won Do Heo and spearheaded experimentally by Jihwan Yu and colleagues, overcame a major obstacle in RNA biology: the lack of tools for transcript-specific acetylation of N4-acetylcytidine (ac4C). By engineering a hyperactive variant of the N-acetyltransferase NAT10—termed eNAT10—through systematic C-terminal truncations (removing residues 802–1025), they achieved a version of the enzyme that maintained substrate specificity while exhibiting 127-fold greater activity on reporter transcripts than full-length NAT10.

Fusing this enhanced enzyme to catalytically dead Cas13 (dCas13) created a programmable acetylation platform guided by single-guide RNAs. The dCas13–eNAT10 fusion efficiently acetylated both exogenous reporters and endogenous transcripts across multiple cell lines and primary cells, with transcriptome-wide analyses confirming the method’s specificity.

Single-base resolution mapping revealed broad acetylation of targeted transcripts, with a pronounced preference for 5′-CCG-3′ motifs. Functionally, mRNAs modified by this system produced 1.2- to 1.4-fold more protein, in line with ac4C’s known role in enhancing translation. Extending their work in vivo, the researchers used dual adeno-associated virus vectors to demonstrate programmable RNA acetylation in mouse liver tissue, setting the stage for future therapeutic applications. This study was published on 2 June in Nature Chemical Biology.

Source: https://crisprmedicinenews.com/news/breaking-crispr-cas13-enables-programmable-rna-acetylation


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